說明
Project Overview
The project aims to investigate species diversity and variety from a citizen science perspective (more of a random character, i.e., not a strictly scientific research character).
Project Goals
- Investigate species diversity and variety on a larger scale (>1,000 samples)
- Give sequences a "face" = metadata such as environmental data, field images, etc.
- Provide tools for species identification
- Use DNA barcoding of the ITS region
- Be cost-effective
- Be methodologically feasible from fruiting body to analyzed sequence
- Disseminate knowledge about the method
Dataset Description
The dataset contains DNA-barcoded samples of fungal fruiting bodies collected in Sweden. The collection has been mostly random and the selection has primarily been based on the collector's own interest. Collectors are mainly amateur mycologists. Barcoding has been performed on the ITS region and parts of the SSU and LSU regions. Additional observational metadata such as coordinates, images, and environmental descriptions are linked to the Swedish Observation System for each respective sample.This dataset was published via the SBDI ASV portal.
資料紀錄
此資源出現紀錄的資料已發佈為達爾文核心集檔案（DwC-A），其以一或多組資料表構成分享生物多樣性資料的標準格式。 核心資料表包含 316 筆紀錄。
亦存在 2 筆延伸集的資料表。延伸集中的紀錄補充核心集中紀錄的額外資訊。 每個延伸集資料表中資料筆數顯示如下。
此 IPT 存放資料以提供資料儲存庫服務。資料與資源的詮釋資料可由「下載」單元下載。「版本」表格列出此資源的其它公開版本，以便利追蹤其隨時間的變更。
版本
以下的表格只顯示可公開存取資源的已發布版本。
如何引用
研究者應依照以下指示引用此資源。:
Fritzson P, Bråvander B (2025). Fungal Diversity Survey Sweden ITS-LSU rDNA. Version 1.1. Biology Section, Uppsala University. Occurrence dataset. https://www.gbif.se/ipt/resource?r=fdss_its-lsu&v=1.1
權利
研究者應尊重以下權利聲明。:
此資料的發布者及權利單位為 Biology Section, Uppsala University。 To the extent possible under law, the publisher has waived all rights to these data and has dedicated them to the Public Domain (CC0 1.0). Users may copy, modify, distribute and use the work, including for commercial purposes, without restriction.
GBIF 註冊
此資源已向GBIF註冊，並指定以下之GBIF UUID: 7510f2e6-ebd2-414e-b91d-7e9c8b673655。 Biology Section, Uppsala University 發佈此資源，並經由GBIF Sweden同意向GBIF註冊成為資料發佈者。
關鍵字
Occurrence; Observation
聯絡資訊
- 出處 ●
- 連絡人
- 出處 ●
- 連絡人
- 連絡人
- Associate Professor
- Evolutionsbiologiskt centrum, Norbyvägen 18D
- +46184716444
地理涵蓋範圍
Sweden
| 界定座標範圍 | 緯度南界 經度西界 [57.843, 14.819], 緯度北界 經度東界 [67.956, 23.25] |
|---|
分類群涵蓋範圍
All fungi samples identified to genus or species
| Kingdom | Fungi |
|---|---|
| Phylum | Ascomycota, Basidiomycota |
| Class | Eurotiomycetes, Geoglossomycetes, Agaricomycetes, Pezizomycetes |
| Order | Pezizales, Polyporales, Eurotiales, Hymenochaetales, Russulales, Thelephorales, Geoglossales, Boletales, Agaricales, Cantharellales, Gomphales |
| Family | Rhizopogonaceae, Tricholomataceae, Russulaceae, Auriscalpiaceae, Entolomataceae, Pluteaceae, Gomphaceae, Lycoperdaceae, Suillaceae, Hydnaceae, Mycenaceae, Physalacriaceae, Amanitaceae, Strophariaceae, Geoglossaceae, Psathyrellaceae, Steccherinaceae, Polyporaceae, Bankeraceae, Elaphomycetaceae, Omphalotaceae, Stereaceae, Clavariaceae, Pyronemataceae, Cortinariaceae, Inocybaceae, Schizoporaceae, Hymenogastraceae, Agaricales_fam_Incertae_sedis, Fomitopsidaceae, Bolbitiaceae, Pterulaceae, Lyophyllaceae, Hygrophoraceae |
時間涵蓋範圍
| 起始日期 / 結束日期 | 2023-04-03 / 2024-02-01 |
|---|
計畫資料
無相關描述
| 計畫名稱 | Fungal Diversity Survey Sweden |
|---|
參與計畫的人員:
- 出處
- 出處
取樣方法
The collection of fruiting bodies has been conducted randomly based on the collector's own interest and knowledge. Both known and unknown species to the collector have been gathered. All fruiting bodies have been dried using a mushroom dryer at a maximum of 35 degrees Celsius and then stored dry and dark in paper envelopes or zip bags. Subsequent handling is described in detail in protocol: https://www.protocols.io/view/uppsala-fungal-barcoding-using-ont-dna-extraction-n2bvj3mbblk5/v1
| 研究範圍 | Collection of fungi, mainly basidiomycetes, within Sweden and primarily in the Uppland province. |
|---|
方法步驟描述:
- Step 1: From collection of fruitbodies to a barcoded sequence https://www.protocols.io/view/uppsala-fungal-barcoding-using-ont-dna-extraction-n2bvj3mbblk5/v1 Step 2: Bioinformatics. Raw reads to consensus sequencies https://github.com/Rosling-lab/ont_barcoding Step 3: Consensus sequencies analysis and database reporting Comming article xxxxx Databases: Swedish Speicies Observation System (Artportalen), GenBank, ENA, ASV
額外的詮釋資料
| 致謝 | Uppsala University/Evolutionary Biology Centre (EBC) Anna Rosling, Brendan Furneaux, Sara Mehrabi, Ioana Onut Brännström, David Manyara , Karl Soler Kinnerbäck Swedish University of Agricultural Sciences (SLU)/Artdatabanken Elisabet Ottosson Umeå University/NBIS, Jeanette Tångrot |
|---|---|
| 替代的識別碼 | 7510f2e6-ebd2-414e-b91d-7e9c8b673655 |
| https://www.gbif.se/ipt/resource?r=fdss_its-lsu |